MolNFT v1 · #174550 · protein
Complex structure of alginate lyase alyf-OU02 with G6
7BZ0: “Complex structure of alginate lyase alyf-OU02 with G6”. X-ray diffraction, 2 ligands (LGU, CA), 1 pocket (best druggability 0.69). MolNFT v1 #174550 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7BZ0
- Type
- protein
- Length
- 496 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alginate lyase alyf-OU02
- EC
- 4.2.2.-
- Ligands
- LGU, CA
- Pockets
- 1 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alginate lyase alyf-OU02 (EC 4.2.2.-) | protein | 496 | 9% helix, 36% strand | — |
Ligands and binding sites
- LGU · alpha-L-gulopyranuronic acid · ligand · 6 copies · chains A
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 670 | 0.69 | 0.77 | 52 | LGU |
Compared structures
- 7BZ0 · complex structure of alginate lyase AlyF-OU02 with G6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7BZ0 · PDBe 7BZ0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.