MolNFT v1 · #174177 · protein
Notum FRAGMENT_50 (3-(quinazolin-4-YLSULFANYL)PROPANOIC acid)
7BNB · Palmitoleoyl-protein carboxylesterase notum: “Notum FRAGMENT_50 (3-(quinazolin-4-YLSULFANYL)PROPANOIC acid)”. X-ray diffraction, 3 ligands (U58, NAG, SO4), 2 pockets (best druggability 0.67). MolNFT v1 #174177 on GenesisL1: 3D…
- PDB
- 7BNB
- Type
- protein
- Length
- 344 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Palmitoleoyl-protein carboxylesterase notum
- EC
- 3.1.1.98
- UniProt
- Q6P988
- Ligands
- U58, NAG, SO4
- Pockets
- 2 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Palmitoleoyl-protein carboxylesterase notum (EC 3.1.1.98) | protein | 344 | 34% helix, 17% strand | Q6P988 |
Ligands and binding sites
- U58 · 3-(quinazolin-4-ylsulfanyl)propanoic acid · ligand · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- SO4 · Sulfate ion · ion · 6 copies · chains A
- DMS · Dimethyl sulfoxide · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 121 | 0.67 | 0.89 | 26 | U58 |
| 2 | 53 | 0.26 | 0.72 | 13 | empty |
Modifications
Observed in the structure: 6 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
- 7BNB · Notum fragment_50 (3-(quinazolin-4-ylsulfanyl)propanoic acid) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6P988
- Elsewhere: RCSB PDB 7BNB · PDBe 7BNB · UniProt Q6P988
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.