MolNFT v1 · #174147 · protein
Notum TDZD8 complex
7BMD: “Notum TDZD8 complex”. X-ray diffraction, 3 ligands (U3W, NAG, SO4). MolNFT v1 #174147 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7BMD
- Type
- protein
- Length
- 344 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6P988
- Ligands
- U3W, NAG, SO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 344 | — | Q6P988 |
Ligands and binding sites
- U3W · 2-methyl-4-(phenylmethyl)-1,2,4-thiadiazolidine-3,5-dione · ligand · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- SO4 · Sulfate ion · ion · 11 copies · chains A
- GOL · Glycerol · additive · 4 copies · chains A
- DMS · Dimethyl sulfoxide · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7BMD · Notum TDZD8 complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6P988
- Elsewhere: RCSB PDB 7BMD · PDBe 7BMD · UniProt Q6P988
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