MolNFT v1 · #17389 · protein
Structure of phosphoenolpyruvate carboxykinase complexed with ATP,MG, ca and pyruvate.
1OS1 · Phosphoenolpyruvate carboxykinase [ATP]: “Structure of phosphoenolpyruvate carboxykinase complexed with ATP,MG, ca and pyruvate.”. X-ray diffraction, 4 ligands (ATP, PYR, MG), 2 pockets (best druggability 0.75). MolNFT v1 #17389 on…
- PDB
- 1OS1
- Type
- protein
- Length
- 537 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphoenolpyruvate carboxykinase [ATP]
- EC
- 4.1.1.49
- UniProt
- P22259
- Ligands
- ATP, PYR, MG, CA
- Pockets
- 2 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | protein | 537 | 31% helix, 23% strand | P22259 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · chains A
- PYR · Pyruvic acid · ligand · chains A
- MG · Magnesium ion · metal · chains A
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 554 | 0.75 | 0.83 | 65 | MG, CA, ATP, PYR |
| 2 | 97 | 0.37 | 0.75 | 20 | empty |
Compared structures
- 1OS1 · Structure of Phosphoenolpyruvate Carboxykinase complexed with ATP,Mg, Ca and pyruvate. · the same entry in another collection · chain A against A, TM-score 1.00
- P22259 · AlphaFold monomer V2.0 prediction for phosphoenolpyruvate carboxykinase (ATP) (P22259) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P22259
- Elsewhere: RCSB PDB 1OS1 · PDBe 1OS1 · UniProt P22259
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