MolNFT v1 · #173844 · protein

Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain DPN7T in complex with gluconate

7BCP · Putative trap transporter solute receptor dctp: “Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain DPN7T in…”. X-ray diffraction, 1 ligand (GCO), 1 pocket (best druggability 0.71).…

PDB: 7BCP
Type: protein
Length: 310 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative trap transporter solute receptor dctp
UniProt: R4JTF7
Ligands: GCO
Pockets: 1 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative trap transporter solute receptor dctp	protein	310	53% helix, 19% strand	R4JTF7

Ligands and binding sites

GCO · D-gluconic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.71	0.98	23	GCO

Compared structures

7BCP · Crystal structure of the sugar acid binding protein DctPAm from Advenella… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt R4JTF7
Elsewhere: RCSB PDB 7BCP · PDBe 7BCP · UniProt R4JTF7

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