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Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain DPN7T in complex with gluconate

Analyse Crystal structure of the sugar acid binding protein dctpam from advenella… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7BCP
Type: protein
Length: 310 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative trap transporter solute receptor dctp
UniProt: R4JTF7
Ligands: GCO
Pockets: 1 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative trap transporter solute receptor dctp	protein	310	53% helix, 19% strand	R4JTF7

Ligands and binding sites

GCO · D-gluconic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.71	0.98	23	GCO

Compared structures

7BCP · Crystal structure of the sugar acid binding protein DctPAm from Advenella… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt R4JTF7
Elsewhere: RCSB PDB 7BCP · PDBe 7BCP · UniProt R4JTF7

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