MolNFT v1 · #173798 · protein
Crystal structure of lugdulysin E242Q Y315F mutant
7BB9: “Crystal structure of lugdulysin E242Q Y315F mutant”. X-ray diffraction, 2 ligands (CA, ZN), 4 pockets (best druggability 0.49). MolNFT v1 #173798 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7BB9
- Type
- protein
- Length
- 399 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lugdulysin E242Q Y315F
- UniProt
- A0A292DHH8
- Ligands
- CA, ZN
- Pockets
- 4 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lugdulysin E242Q Y315F | protein | 399 | 36% helix, 18% strand | A0A292DHH8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 106 | 0.49 | 0.81 | 20 | empty |
| 2 | 89 | 0.43 | 0.79 | 18 | empty |
| 3 | 58 | 0.35 | 0.79 | 18 | empty |
| 4 | 61 | 0.29 | 0.74 | 17 | empty |
Compared structures
- 7BB9 · Crystal structure of Lugdulysin E242Q Y315F mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A292DHH8
- Elsewhere: RCSB PDB 7BB9 · PDBe 7BB9 · UniProt A0A292DHH8
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.