MolNFT v1 · #173598 · protein
Broadly neutralizing darpin BND.3 in complex with the HIV-1 envelope variable loop 3 crown mimetic peptide V3-if (BG505)
7B4W: “Broadly neutralizing darpin BND.3 in complex with the HIV-1 envelope variable loop 3 crown mimetic peptide…”. X-ray diffraction, 2 ligands (CA, NA). MolNFT v1 #173598 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7B4W
- Type
- protein
- Length
- 350 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- CA, NA
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 161 | — | — |
| C | — | protein | 159 | — | — |
| B, D | — | protein | 15 | — | — |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A, C
- NA · Sodium ion · metal · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · chains A
- ACT · Acetate ion · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7B4W · Broadly neutralizing DARPin bnD.3 in complex with the HIV-1 envelope variable loop 3… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7B4W · PDBe 7B4W
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