MolNFT v1 · #173517 · protein
Crystal structure of the methyl-coenzyme M reductase from methanothermobacter marburgensis derivatized with xenon
7B2H: “Crystal structure of the methyl-coenzyme M reductase from methanothermobacter marburgensis derivatized with…”. X-ray diffraction, 7 ligands (COM, F43, MG). MolNFT v1 #173517 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7B2H
- Type
- protein
- Length
- 2,466 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P11558, P11560, P11562
- Ligands
- COM, F43, MG, K, XE, CL, SO4
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | — | protein | 548 | — | P11558 |
| B | — | protein | 442 | — | P11560 |
| C | — | protein | 248 | — | P11562 |
| E | — | protein | 441 | — | P11560 |
| F | — | protein | 239 | — | P11562 |
Ligands and binding sites
- COM · 1-thioethanesulfonic acid · ligand · 2 copies · chains A, B, C, D, E, F
- F43 · Factor 430 · ligand · 2 copies · chains A, B, C, D, E, F
- MG · Magnesium ion · metal · 15 copies · chains A, D, B, C, E, F
- K · Potassium ion · metal · 4 copies · chains A, D, B
- XE · Xenon · ion · 12 copies · chains A, B, C, D, E, F
- CL · Chloride ion · ion · 2 copies · chains B, E
- SO4 · Sulfate ion · ion · chains A, D
- PEG · Di(hydroxyethyl)ether · additive · 9 copies · chains A, B, D, F, E
- GOL · Glycerol · additive · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7B2H · Crystal structure of the methyl-coenzyme M reductase from Methanothermobacter… · the same entry in another collection · chain F against F, TM-score 1.00
- P11558 · AlphaFold monomer V2.0 prediction for methyl-coenzyme M reductase I subunit alpha (P11558) · a predicted model of the same protein · chain A against A, TM-score 1.00
- P11560 · AlphaFold monomer V2.0 prediction for methyl-coenzyme M reductase I subunit beta (P11560) · a predicted model of the same protein · chain B against A, TM-score 1.00
- P11562 · AlphaFold monomer V2.0 prediction for methyl-coenzyme M reductase I subunit gamma (P11562) · a predicted model of the same protein · chain F against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P11558
- Every structure of UniProt P11560
- Every structure of UniProt P11562
- Elsewhere: RCSB PDB 7B2H · PDBe 7B2H · UniProt P11558 · UniProt P11560 · UniProt P11562
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