MolNFT v1 · #173493 · protein
Crystal structure of phosphatidyl serine synthase (pss) in the closed conformation with bound citrate.
7B1L: “Crystal structure of phosphatidyl serine synthase (pss) in the closed conformation with bound citrate.”. X-ray diffraction, 5 ligands (58A, CA, NA). MolNFT v1 #173493 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7B1L
- Type
- protein
- Length
- 404 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q58609
- Ligands
- 58A, CA, NA, MG, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 202 | — | Q58609 |
Ligands and binding sites
- 58A · 5'-O-[(R)-{[(S)-{(2R)-2,3-bis[(9e)-octadec-9-enoyloxy]propoxy}(hydroxy)phosphoryl]oxy}(hydroxy) phosphoryl]cytidine · ligand · 2 copies · chains A, B
- CA · Calcium ion · metal · 2 copies · chains A, B
- NA · Sodium ion · metal · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
- CL · Chloride ion · ion · 6 copies · chains A, B
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 8 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7B1L · Crystal structure of phosphatidyl serine synthase (PSS) in the closed conformation with… · the same entry in another collection · chain A against A, TM-score 0.99
- Q58609 · AlphaFold monomer V2.0 prediction for cdp-diacylglycerol--serine… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q58609
- Elsewhere: RCSB PDB 7B1L · PDBe 7B1L · UniProt Q58609
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