MolNFT v1 · #173462 · protein
In meso structure of the membrane integral lipoprotein intramolecular transacylase lit from bacillus cereus in space group P21
7B0O · Hypothetical membrane spanning protein: “In meso structure of the membrane integral lipoprotein intramolecular transacylase lit from bacillus cereus…”. X-ray diffraction, 5 pockets (best druggability 0.82). MolNFT v1 #173462 on…
- PDB
- 7B0O
- Type
- protein
- Length
- 427 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical membrane spanning protein
- UniProt
- Q813T3
- Pockets
- 5 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 75% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical membrane spanning protein | protein | 216 | 77% helix, 0% strand | Q813T3 |
| B | Hypothetical membrane spanning protein | protein | 211 | 73% helix, 0% strand | Q813T3 |
Ligands and binding sites
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 11 copies · chains A, B
- GOL · Glycerol · additive · 10 copies · chains A, B
- PG5 · 1-methoxy-2-[2-(2-methoxy-ethoxy]-ethane · additive · 2 copies · chains B
- PE5 · 3,6,9,12,15,18,21,24-octaoxahexacosan-1-ol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 668 | 0.82 | 0.85 | 45 | OLC |
| 2 | 663 | 0.82 | 0.85 | 49 | OLC |
| 3 | 109 | 0.38 | 0.74 | 18 | OLC |
| 4 | 97 | 0.34 | 0.73 | 18 | empty |
| 5 | 86 | 0.31 | 0.72 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 494 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 7B0O · In meso structure of the membrane integral lipoprotein intramolecular transacylase Lit… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q813T3
- Elsewhere: RCSB PDB 7B0O · PDBe 7B0O · UniProt Q813T3
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