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In meso structure of the membrane integral lipoprotein intramolecular transacylase lit from bacillus cereus in space group P21
Analyse In meso structure of the membrane integral lipoprotein intramolecular… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7B0O
- Type
- protein
- Length
- 427 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical membrane spanning protein
- UniProt
- Q813T3
- Pockets
- 5 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 75% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical membrane spanning protein | protein | 216 | 77% helix, 0% strand | Q813T3 |
| B | Hypothetical membrane spanning protein | protein | 211 | 73% helix, 0% strand | Q813T3 |
Ligands and binding sites
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 11 copies · chains A, B
- GOL · Glycerol · additive · 10 copies · chains A, B
- PG5 · 1-methoxy-2-[2-(2-methoxy-ethoxy]-ethane · additive · 2 copies · chains B
- PE5 · 3,6,9,12,15,18,21,24-octaoxahexacosan-1-ol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 668 | 0.82 | 0.85 | 45 | OLC |
| 2 | 663 | 0.82 | 0.85 | 49 | OLC |
| 3 | 109 | 0.38 | 0.74 | 18 | OLC |
| 4 | 97 | 0.34 | 0.73 | 18 | empty |
| 5 | 86 | 0.31 | 0.72 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 494 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 7B0O · In meso structure of the membrane integral lipoprotein intramolecular transacylase Lit… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q813T3
- Elsewhere: RCSB PDB 7B0O · PDBe 7B0O · UniProt Q813T3
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