MolNFT v1 · #173411 · protein

X-ray crystallographic structure of (6-4)PHOTOLYASE from drosophila melanogaster at cryogenic temperature

7AYV · RE11660P: “X-ray crystallographic structure of (6-4)PHOTOLYASE from drosophila melanogaster at cryogenic temperature”. X-ray diffraction, 2 ligands (FAD, SO4), 4 pockets (best druggability 0.82). MolNFT v1 #173411 on GenesisL1: 3D…

PDB: 7AYV
Type: protein
Length: 502 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RE11660P
UniProt: Q8SXK5
Ligands: FAD, SO4
Pockets: 4 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 49% helix, 7% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RE11660P	protein	502	49% helix, 7% strand	Q8SXK5

Ligands and binding sites

FAD · Flavin-adenine dinucleotide · ligand · chains A
SO4 · Sulfate ion · ion · 5 copies · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	444	0.82	0.89	45	GOL, FAD
2	554	0.76	0.82	30	empty
3	98	0.41	0.77	20	empty
4	94	0.38	0.75	19	empty

Compared structures

7AYV · X-ray crystallographic structure of (6-4)photolyase from Drosophila melanogaster at… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8SXK5
Elsewhere: RCSB PDB 7AYV · PDBe 7AYV · UniProt Q8SXK5

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