MolNFT v1 · #173280 · protein
Yeast diphosphoinositol polyphosphate phosphohydrolase DDP1 in complex with pcp-INSP7
7AUP: “Yeast diphosphoinositol polyphosphate phosphohydrolase DDP1 in complex with pcp-INSP7”. X-ray diffraction, 2 ligands (VEB, MG). MolNFT v1 #173280 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7AUP
- Type
- protein
- Length
- 160 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q99321
- Ligands
- VEB, MG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 160 | — | Q99321 |
Ligands and binding sites
- VEB · [oxidanyl-[(2~{S},3~{S},5~{R},6~{S})-2,3,4,5,6-pentaphosphonooxycyclohexyl]oxy-phosphoryl]methylphosphonic acid · ligand · chains A
- MG · Magnesium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7AUP · Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in complex with PCP-InsP7 · the same entry in another collection · chain A against A, TM-score 1.00
- Q99321 · AlphaFold monomer V2.0 prediction for diphosphoinositol polyphosphate phosphohydrolase… · a predicted model of the same protein · chain A against A, TM-score 0.88
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q99321
- Elsewhere: RCSB PDB 7AUP · PDBe 7AUP · UniProt Q99321
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