MolNFT v1 · #173167 · protein
Co-crystal structure of variant surface glycoprotein VSG2 in complex with nanobody VSG2(NB9)
7AQX: “Co-crystal structure of variant surface glycoprotein VSG2 in complex with nanobody VSG2(NB9)”. X-ray diffraction, 4 ligands (NAG, BMA, MAN). MolNFT v1 #173167 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7AQX
- Type
- protein
- Length
- 939 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P26332
- Ligands
- NAG, BMA, MAN, NA
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 362 | — | P26332 |
| C | — | protein | 116 | — | — |
| D | — | protein | 99 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A, B
- BMA · beta-D-mannopyranose · sugar · 2 copies · chains A, B
- MAN · alpha-D-mannopyranose · sugar · chains B
- NA · Sodium ion · metal · 2 copies · chains C, D
- CIT · Citric acid · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7AQX · Co-Crystal Structure of Variant Surface Glycoprotein VSG2 in complex with Nanobody… · the same entry in another collection · chain A against A, TM-score 1.00
- P26332 · AlphaFold monomer V2.0 prediction for variant surface glycoprotein mitat 1.2 (P26332) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P26332
- Elsewhere: RCSB PDB 7AQX · PDBe 7AQX · UniProt P26332
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