MolNFT v1 · #172975 · protein
Crystal structure of STK17B with bound dovitinib
7AKG · SERINE/THREONINE-protein kinase 17B: “Crystal structure of STK17B with bound dovitinib”. X-ray diffraction, 1 ligand (38O), 1 pocket (best druggability 0.71). MolNFT v1 #172975 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 7AKG
- Type
- protein
- Length
- 293 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SERINE/THREONINE-protein kinase 17B
- EC
- 2.7.11.1
- UniProt
- O94768
- Ligands
- 38O
- Pockets
- 1 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SERINE/THREONINE-protein kinase 17B (EC 2.7.11.1) | protein | 293 | 37% helix, 19% strand | O94768 |
Ligands and binding sites
- 38O · 4-amino-5-fluoro-3-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]quinolin-2(1H)-one · ligand · chains A
- EDO · 1,2-ethanediol · additive · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 596 | 0.71 | 0.79 | 56 | 38O |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O94768
- Elsewhere: RCSB PDB 7AKG · PDBe 7AKG · UniProt O94768
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