MolNFT v1 · #17288 · protein

Structural genomics of caenorhabditis elegans : calmodulin

1OOJ · Calmodulin cmd-1: “Structural genomics of caenorhabditis elegans : calmodulin”. X-ray diffraction, 1 ligand (CA), 2 pockets (best druggability 0.52). MolNFT v1 #17288 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1OOJ
Type: protein
Length: 141 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Calmodulin cmd-1
UniProt: O16305
Ligands: CA
Pockets: 2 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 61% helix, 6% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Calmodulin cmd-1	protein	141	61% helix, 6% strand	O16305

Ligands and binding sites

CA · Calcium ion · metal · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	91	0.52	0.82	14	empty
2	59	0.43	0.80	12	empty

Compared structures

1OOJ · Structural genomics of Caenorhabditis elegans : Calmodulin · the same entry in another collection · chain A against A, TM-score 1.00
O16305 · AlphaFold monomer V2.0 prediction for calmodulin (O16305) · a predicted model of the same protein · chain A against A, TM-score 0.80

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O16305
Elsewhere: RCSB PDB 1OOJ · PDBe 1OOJ · UniProt O16305

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