MolNFT v1 · #172808 · protein
Structure of sedimentibacter hydroxybenzoicus vanillic acid decarboxylase (shvdccd) in open form, with truncated shvdcd (V59X)
7AE7: “Structure of sedimentibacter hydroxybenzoicus vanillic acid decarboxylase (shvdccd) in open form, with…”. X-ray diffraction, 2 ligands (ZN, NA). MolNFT v1 #172808 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7AE7
- Type
- protein
- Length
- 3,146 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9S4M7, Q4R102
- Ligands
- ZN, NA
Structure
x-ray diffraction · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 467 | — | Q9S4M7 |
| B | — | protein | 468 | — | Q9S4M7 |
| C | — | protein | 471 | — | Q9S4M7 |
| D | — | protein | 475 | — | Q9S4M7 |
| E | — | protein | 461 | — | Q9S4M7 |
| F | — | protein | 471 | — | Q9S4M7 |
| a, c, d, e, f | — | protein | 57 | — | Q4R102 |
| b | — | protein | 48 | — | Q4R102 |
Ligands and binding sites
- ZN · Zinc ion · metal · 6 copies · chains a, b, c, d, e, f
- NA · Sodium ion · metal · 5 copies · chains A, C, B, E, D, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7AE7 · Structure of Sedimentibacter hydroxybenzoicus vanillic acid decarboxylase (ShVdcCD) in… · the same entry in another collection · chain f against f, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9S4M7
- Every structure of UniProt Q4R102
- Elsewhere: RCSB PDB 7AE7 · PDBe 7AE7 · UniProt Q9S4M7 · UniProt Q4R102
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