MolNFT v1 · #172774 · protein
Crystal structure of the effector AVRLM5-9 from leptosphaeria maculans
7AD5 · Avirulence protein LMJ1: “Crystal structure of the effector AVRLM5-9 from leptosphaeria maculans”. X-ray diffraction, 1 ligand (NI). MolNFT v1 #172774 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7AD5
- Type
- protein
- Length
- 124 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Avirulence protein LMJ1
- UniProt
- V5TFR9
- Ligands
- NI
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Avirulence protein LMJ1 | protein | 124 | 27% helix, 33% strand | V5TFR9 |
Ligands and binding sites
- NI · Nickel (II) ion · metal · 3 copies · chains A
- ACT · Acetate ion · additive · 2 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 7AD5 · Crystal structure of the effector AvrLm5-9 from Leptosphaeria maculans · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt V5TFR9
- Elsewhere: RCSB PDB 7AD5 · PDBe 7AD5 · UniProt V5TFR9
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