MolNFT v1 · #172745 · protein

Thrombin in complex with D-arginine (J77)

7AC9: “Thrombin in complex with D-arginine (J77)”. X-ray diffraction, 3 ligands (NAG, NA, PO4). MolNFT v1 #172745 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7AC9
Type: protein
Length: 290 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P00734, P09945
Ligands: NAG, NA, PO4

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
L	—	protein	28	—	P00734
H	—	protein	252	—	P00734
I	—	protein	10	—	P09945

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains H
NA · Sodium ion · metal · 2 copies · chains H
PO4 · Phosphate ion · ion · chains H
DMS · Dimethyl sulfoxide · additive · 2 copies · chains H

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7AC9 · Thrombin in complex with D-arginine (j77) · the same entry in another collection · chain L against L, TM-score 1.00
P09945 · AlphaFold monomer V2.0 prediction for hirudin variant-2 (P09945) · a predicted model of the same protein · chain I against A, TM-score 0.55

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00734
Every structure of UniProt P09945
Elsewhere: RCSB PDB 7AC9 · PDBe 7AC9 · UniProt P00734 · UniProt P09945

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