MolNFT v1 · #172674 · protein + RNA

Structure of yeast RMD9P in complex with 20NT target RNA

7A9W: “Structure of yeast RMD9P in complex with 20NT target RNA”. X-ray diffraction, 1 ligand (CL). MolNFT v1 #172674 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7A9W
Type: protein + RNA
Length: 529 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P53140
Ligands: CL

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	513	—	P53140
B	—	rna	16	—	—

Ligands and binding sites

CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7A9W · Structure of yeast Rmd9p in complex with 20nt target RNA · the same entry in another collection · chain A against A, TM-score 1.00
P53140 · AlphaFold monomer V2.0 prediction for protein RMD9, mitochondrial (P53140) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P53140
Elsewhere: RCSB PDB 7A9W · PDBe 7A9W · UniProt P53140

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