MolNFT v1 · #379466 · protein
AlphaFold monomer V2.0 prediction for protein RMD9, mitochondrial (P53140)
P53140: “AlphaFold monomer V2.0 prediction for protein RMD9, mitochondrial (P53140)”. 6 pockets (best druggability 0.79). MolNFT v1 #379466 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P53140
- Type
- protein
- Length
- 646 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x362a6d063b1B7E1B6EfD3A9A7CA3612e3FE037AA
- Molecule
- Protein RMD9, mitochondrial
- UniProt
- P53140
- Pockets
- 6 · best druggability 0.79
Structure
1 distinct chain · 66% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein RMD9, mitochondrial | protein | 646 | 66% helix, 0% strand | P53140 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1197 | 0.79 | 0.81 | 118 | empty |
| 2 | 429 | 0.67 | 0.79 | 31 | empty |
| 3 | 172 | 0.44 | 0.74 | 17 | empty |
| 4 | 107 | 0.41 | 0.77 | 16 | empty |
| 5 | 103 | 0.39 | 0.75 | 15 | empty |
Compared structures
- 7A9X · Structure of yeast RMD9P in complex with 16NT target RNA · an experimental structure of the same protein · chain A against A, TM-score 0.75
- 7A9X · Structure of yeast Rmd9p in complex with 16nt target RNA · an experimental structure of the same protein · chain A against A, TM-score 0.75
- 7A9W · Structure of yeast Rmd9p in complex with 20nt target RNA · an experimental structure of the same protein · chain A against A, TM-score 0.75
- 7A9W · Structure of yeast RMD9P in complex with 20NT target RNA · an experimental structure of the same protein · chain A against A, TM-score 0.75
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53140
- Elsewhere: UniProt P53140 · AlphaFold DB P53140
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