MolNFT v1 · #172624 · protein

RSGREEN0.7-K206A-F145S in the green-off state

7A8C · Green fluorescent protein: “RSGREEN0.7-K206A-F145S in the green-off state”. X-ray diffraction, 1 ligand (CRO), 2 pockets (best druggability 0.76). MolNFT v1 #172624 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7A8C
Type: protein
Length: 225 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Green fluorescent protein
UniProt: A0A059PIQ0
Ligands: CRO
Pockets: 2 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 11% helix, 52% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Green fluorescent protein	protein	225	11% helix, 52% strand	A0A059PIQ0

Ligands and binding sites

CRO · {2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-(4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · chains A
PGE · Triethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	100	0.76	0.97	30	CRO
2	55	0.28	0.74	13	empty

Modifications

Observed in the structure: 2 cofactor (chromophore).

Compared structures

7A8C · rsGreen0.7-K206A-F145S in the green-off state · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A059PIQ0
Elsewhere: RCSB PDB 7A8C · PDBe 7A8C · UniProt A0A059PIQ0

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