MolNFT v1 · #172621 · protein
RSGREEN0.7-K206A-F145Q in the green-on state
7A89 · Green fluorescent protein: “RSGREEN0.7-K206A-F145Q in the green-on state”. X-ray diffraction, 1 ligand (CRO), 6 pockets (best druggability 0.79). MolNFT v1 #172621 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7A89
- Type
- protein
- Length
- 449 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Green fluorescent protein
- UniProt
- A0A059PIQ0
- Ligands
- CRO
- Pockets
- 6 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 10% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Green fluorescent protein | protein | 224 | 11% helix, 53% strand | A0A059PIQ0 |
| B | Green fluorescent protein | protein | 225 | 10% helix, 52% strand | A0A059PIQ0 |
Ligands and binding sites
- CRO · {2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-(4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 132 | 0.79 | 0.97 | 34 | CRO |
| 2 | 102 | 0.78 | 0.98 | 28 | CRO |
| 3 | 137 | 0.41 | 0.75 | 24 | empty |
| 4 | 95 | 0.34 | 0.74 | 20 | empty |
| 5 | 99 | 0.32 | 0.72 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 806 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 cofactor (chromophore).
Compared structures
- 7A89 · rsGreen0.7-K206A-F145Q in the green-on state · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A059PIQ0
- Elsewhere: RCSB PDB 7A89 · PDBe 7A89 · UniProt A0A059PIQ0
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