MolNFT v1 · #172584 · protein
Crystal structure of the two-domain cyclophilina from anabaena sp.
7A73 · ALR5059 protein: “Crystal structure of the two-domain cyclophilina from anabaena sp.”. X-ray diffraction, 1 ligand (CA), 5 pockets (best druggability 0.55). MolNFT v1 #172584 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7A73
- Type
- protein
- Length
- 334 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ALR5059 protein
- UniProt
- Q8YM80
- Ligands
- CA
- Pockets
- 5 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ALR5059 protein | protein | 334 | 35% helix, 19% strand | Q8YM80 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 145 | 0.55 | 0.81 | 18 | empty |
| 2 | 188 | 0.45 | 0.74 | 25 | empty |
| 3 | 137 | 0.40 | 0.73 | 30 | empty |
| 4 | 69 | 0.32 | 0.75 | 16 | empty |
| 5 | 51 | 0.30 | 0.76 | 17 | empty |
Compared structures
- 7A73 · Crystal structure of the two-domain cyclophilinA from Anabaena sp. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8YM80
- Elsewhere: RCSB PDB 7A73 · PDBe 7A73 · UniProt Q8YM80
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