MolNFT v1 · #172441 · protein
Crystal structure of the fyn SH3 domain A95S-D99T mutant in C21 space group
7A2M · Tyrosine-protein kinase fyn: “Crystal structure of the fyn SH3 domain A95S-D99T mutant in C21 space group”. X-ray diffraction, 2 ligands (NA, SO4), 1 pocket (best druggability 0.26). MolNFT v1 #172441 on GenesisL1: 3D structure…
- PDB
- 7A2M
- Type
- protein
- Length
- 118 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tyrosine-protein kinase fyn
- EC
- 2.7.10.2
- UniProt
- P06241
- Ligands
- NA, SO4
- Pockets
- 1 · best druggability 0.26
Structure
x-ray diffraction · 2 distinct chains · 5% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tyrosine-protein kinase fyn (EC 2.7.10.2) | protein | 58 | 5% helix, 47% strand | P06241 |
| B | Tyrosine-protein kinase fyn (EC 2.7.10.2) | protein | 60 | 5% helix, 40% strand | P06241 |
Ligands and binding sites
- NA · Sodium ion · metal · 3 copies · chains A, B
- SO4 · Sulfate ion · ion · chains A, B
- FMT · Formic acid · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 54 | 0.26 | 0.74 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 308 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 7A2M · Crystal structure of the Fyn SH3 domain A95S-D99T mutant in C21 space group · the same entry in another collection · chain A against A, TM-score 1.00
- P06241 · AlphaFold monomer V2.0 prediction for tyrosine-protein kinase fyn (P06241) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06241
- Elsewhere: RCSB PDB 7A2M · PDBe 7A2M · UniProt P06241
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