MolNFT v1 · #172316 · protein
Structure of vim-2 with 2-mercaptomethyl-thiazolidine L-anti-1B
6ZYN: “Structure of vim-2 with 2-mercaptomethyl-thiazolidine L-anti-1B”. X-ray diffraction, 2 ligands (QT2, ZN). MolNFT v1 #172316 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ZYN
- Type
- protein
- Length
- 462 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9K2N0
- Ligands
- QT2, ZN
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 231 | — | Q9K2N0 |
Ligands and binding sites
- QT2 · (2~{S},4~{R})-2-ethoxycarbonyl-5,5-dimethyl-2-(sulfanylmethyl)-1,3-thiazolidine-4-carboxylic acid · ligand · 2 copies · chains A, B
- ZN · Zinc ion · metal · 6 copies · chains A, B
- FMT · Formic acid · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ZYN · Structure of VIM-2 with 2-Mercaptomethyl-thiazolidine L-anti-1b · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9K2N0
- Elsewhere: RCSB PDB 6ZYN · PDBe 6ZYN · UniProt Q9K2N0
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