MolNFT v1 · #172213 · protein

Crystal structure of MY5

6ZVA · Myomesin-1: “Crystal structure of MY5”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #172213 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6ZVA
Type: protein
Length: 189 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Myomesin-1
UniProt: P52179
Ligands: SO4

Structure

x-ray diffraction · 2 distinct chains · 0% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Myomesin-1	protein	94	0% helix, 50% strand	P52179
A	Myomesin-1	protein	95	0% helix, 51% strand	P52179

Ligands and binding sites

SO4 · Sulfate ion · ion · 7 copies · chains B, A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

B–A · 1991 Å² buried · 37 hydrogen bonds · protein-protein

Compared structures

6ZVA · Crystal structure of My5 · the same entry in another collection · chain B against B, TM-score 1.00
P52179 · AlphaFold monomer V2.0 prediction for myomesin-1 (P52179) · a predicted model of the same protein · chain A against A, TM-score 0.80

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P52179
Elsewhere: RCSB PDB 6ZVA · PDBe 6ZVA · UniProt P52179

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