MolNFT v1 · #172104 · protein
Structure of the human RBAP48 in complex with a macrocyclic peptide cyclized via a xylene linker attached to two cysteines
6ZRD: “Structure of the human RBAP48 in complex with a macrocyclic peptide cyclized via a xylene linker attached to…”. X-ray diffraction, 3 ligands (ACE, SEZ, NH2). MolNFT v1 #172104 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6ZRD
- Type
- protein
- Length
- 828 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q09028
- Ligands
- ACE, SEZ, NH2
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 411 | — | Q09028 |
| B | — | protein | 389 | — | Q09028 |
| P, Q | — | protein | 14 | — | — |
Ligands and binding sites
- ACE · Acetyl group · ligand · 2 copies · chains P, Q
- SEZ · 1,3,5-trimethylbenzene · ligand · 2 copies · chains A, P, B, Q
- NH2 · Amino group · ion · 2 copies · chains P, Q
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ZRD · STRUCTURE OF THE HUMAN RBAP48 in complex with a macrocyclic peptide cyclized via a xylene… · the same entry in another collection · chain A against A, TM-score 1.00
- Q09028 · AlphaFold monomer V2.0 prediction for histone-binding protein RBBP4 (Q09028) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q09028
- Elsewhere: RCSB PDB 6ZRD · PDBe 6ZRD · UniProt Q09028
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