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MolNFT v1 · #171996 · protein

The pointed end complex of dynactin with the P150 projection docked

6ZNO: “The pointed end complex of dynactin with the P150 projection docked”. Electron microscopy, 3 ligands (ADP, ATP, ZN). MolNFT v1 #171996 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6ZNO
Type
protein
Length
2,697 residues
Chains
10
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
F2Z5G5, Q6QAQ1, I3LHK5, A0A5G2QD80, D0G6S1, A0A286ZK88, A0A4X1TB62
Ligands
ADP, ATP, ZN

Structure

electron microscopy · 9 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
G, I—protein370—F2Z5G5
H—protein370—Q6QAQ1
J—protein379—I3LHK5
M—protein75—A0A5G2QD80
U—protein167—D0G6S1
V—protein179—A0A286ZK88
Y—protein410—A0A4X1TB62
Z—protein189——
z—protein188——

Ligands and binding sites

  • ADP · Adenosine-5'-diphosphate · ligand · 3 copies · chains G, I, J, Y
  • ATP · Adenosine-5'-triphosphate · ligand · chains H
  • ZN · Zinc ion · metal · 3 copies · chains Y

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6ZNO · The pointed end complex of dynactin with the p150 projection docked · the same entry in another collection · chain z against z, TM-score 1.00
  • Q6QAQ1 · AlphaFold monomer V2.0 prediction for actin, cytoplasmic 1 (Q6QAQ1) · a predicted model of the same protein · chain H against A, TM-score 0.96

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