MolNFT v1 · #171950 · protein
The structure of the clpx-associated factor PDIP38
6ZLX · Polymerase delta-interacting protein 2: “The structure of the clpx-associated factor PDIP38”. X-ray diffraction, 1 ligand (PT), 1 pocket (best druggability 0.57). MolNFT v1 #171950 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6ZLX
- Type
- protein
- Length
- 240 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polymerase delta-interacting protein 2
- UniProt
- Q9Y2S7
- Ligands
- PT
- Pockets
- 1 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polymerase delta-interacting protein 2 | protein | 240 | 9% helix, 52% strand | Q9Y2S7 |
Ligands and binding sites
- PT · Platinum (II) ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 258 | 0.57 | 0.78 | 38 | PT |
Compared structures
- 6ZLX · The structure of the ClpX-associated factor PDIP38 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y2S7 · AlphaFold monomer V2.0 prediction for polymerase delta-interacting protein 2 (Q9Y2S7) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y2S7
- Elsewhere: RCSB PDB 6ZLX · PDBe 6ZLX · UniProt Q9Y2S7
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