MolNFT v1 · #171889 · protein
Plant nucleoside hydrolase - ZMNRH2B in complex with forodesine
6ZK2: “Plant nucleoside hydrolase - ZMNRH2B in complex with forodesine”. X-ray diffraction, 2 ligands (IMH, CA). MolNFT v1 #171889 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ZK2
- Type
- protein
- Length
- 1,264 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B6THD4
- Ligands
- IMH, CA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | — | protein | 316 | — | B6THD4 |
Ligands and binding sites
- IMH · 1,4-dideoxy-4-aza-1-(S)-(9-deazahypoxanthin-9-yl)-D-ribitol · ligand · 4 copies · chains A, B, C, D
- CA · Calcium ion · metal · 4 copies · chains A, B, C, D
- EDO · 1,2-ethanediol · additive · 15 copies · chains A, B, C, D
- DMS · Dimethyl sulfoxide · additive · 12 copies · chains A, B, C, D
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains B, C, D
- PGE · Triethylene glycol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ZK2 · Plant nucleoside hydrolase - ZmNRh2b in complex with forodesine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B6THD4
- Elsewhere: RCSB PDB 6ZK2 · PDBe 6ZK2 · UniProt B6THD4
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