MolNFT v1 · #171870 · protein

Crystal structure of STK17B (DRAK2) in complex with ap-229

6ZJF · SERINE/THREONINE-protein kinase 17B: “Crystal structure of STK17B (DRAK2) in complex with ap-229”. X-ray diffraction, 1 ligand (QM2), 1 pocket (best druggability 0.73). MolNFT v1 #171870 on GenesisL1: 3D structure, binding sites and…

PDB: 6ZJF
Type: protein
Length: 293 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SERINE/THREONINE-protein kinase 17B
EC: 2.7.11.1
UniProt: O94768
Ligands: QM2
Pockets: 1 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SERINE/THREONINE-protein kinase 17B (EC 2.7.11.1)	protein	293	41% helix, 19% strand	O94768

Ligands and binding sites

QM2 · 2-[6-(4-cyclopropylphenyl)thieno[3,2-d]pyrimidin-4-yl]sulfanylethanoic acid · ligand · chains A
EDO · 1,2-ethanediol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	513	0.73	0.81	57	QM2, EDO

Compared structures

6ZJF · Crystal structure of STK17B (DRAK2) in complex with AP-229 · the same entry in another collection · chain A against A, TM-score 1.00
O94768 · AlphaFold monomer V2.0 prediction for SERINE/THREONINE-protein kinase 17B (O94768) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O94768
Elsewhere: RCSB PDB 6ZJF · PDBe 6ZJF · UniProt O94768

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.