MolNFT v1 · #171865 · protein
Helicobacter pylori urease with inhibitor bound in the active site
6ZJA: “Helicobacter pylori urease with inhibitor bound in the active site”. Electron microscopy, 2 ligands (DJM, NI). MolNFT v1 #171865 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ZJA
- Type
- protein
- Length
- 9,684 residues
- Chains
- 24
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A293SGE9, A0A086RWB6
- Ligands
- DJM, NI
Structure
electron microscopy · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E, G, I, K, M, O, Q, S, U, W | — | protein | 238 | — | A0A293SGE9 |
| B, J, D, F, H, L, N, P, R, T, V, X | — | protein | 569 | — | A0A086RWB6 |
Ligands and binding sites
- DJM · 2-{[1-(3,5-dimethylphenyl)-1H-imidazol-2-yl]sulfanyl}-N-hydroxyacetamide · ligand · 12 copies · chains B, R, J, L, D, X, F, V, H, T, N, P
- NI · Nickel (II) ion · metal · 24 copies · chains B, J, D, F, H, L, N, P, R, T, V, X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ZJA · Helicobacter pylori urease with inhibitor bound in the active site · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A293SGE9
- Every structure of UniProt A0A086RWB6
- Elsewhere: RCSB PDB 6ZJA · PDBe 6ZJA · UniProt A0A293SGE9 · UniProt A0A086RWB6
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