MolNFT v1 · #171793 · protein
Crystal structure of a mfs transporter with bound 2-naphthoic acid at 2.39 angstroem resolution
6ZGT · L-lactate transporter: “Crystal structure of a mfs transporter with bound 2-naphthoic acid at 2.39 angstroem resolution”. X-ray diffraction, 1 ligand (FIV), 5 pockets (best druggability 0.75). MolNFT v1 #171793 on GenesisL1: 3D…
- PDB
- 6ZGT
- Type
- protein
- Length
- 768 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- L-lactate transporter
- UniProt
- A0LNN5
- Ligands
- FIV
- Pockets
- 5 · best druggability 0.75
Structure
x-ray diffraction · 2 distinct chains · 84% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | L-lactate transporter | protein | 404 | 81% helix, 1% strand | A0LNN5 |
| B | L-lactate transporter | protein | 364 | 87% helix, 0% strand | A0LNN5 |
Ligands and binding sites
- FIV · naphthalene-2-carboxylic acid · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 697 | 0.75 | 0.80 | 44 | FIV |
| 2 | 696 | 0.75 | 0.80 | 53 | FIV |
| 3 | 475 | 0.69 | 0.78 | 36 | empty |
| 4 | 562 | 0.65 | 0.75 | 57 | empty |
| 5 | 107 | 0.42 | 0.77 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 422 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6ZGT · Crystal structure of a MFS transporter with bound 2-naphthoic acid at 2.39 Angstroem… · the same entry in another collection · chain A against A, TM-score 1.00
- A0LNN5 · AlphaFold monomer V2.0 prediction for L-lactate transporter (A0LNN5) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0LNN5
- Elsewhere: RCSB PDB 6ZGT · PDBe 6ZGT · UniProt A0LNN5
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