MolNFT v1 · #171790 · protein
Acel nrdhf class 3 split intein gsh linked splice inactive variant - C124A, N146A
6ZGQ · Acel nrdhf-1-1 intein: “Acel nrdhf class 3 split intein gsh linked splice inactive variant - C124A, N146A”. X-ray diffraction, 1 ligand (IOD), 2 pockets (best druggability 0.67). MolNFT v1 #171790 on GenesisL1: 3D structure, binding…
- PDB
- 6ZGQ
- Type
- protein
- Length
- 307 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Acel nrdhf-1-1 intein
- Ligands
- IOD
- Pockets
- 2 · best druggability 0.67
Structure
x-ray diffraction · 2 distinct chains · 6% helix, 58% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Acel nrdhf-1-1 intein | protein | 153 | 6% helix, 59% strand | — |
| B | Acel nrdhf-1-1 intein | protein | 154 | 6% helix, 58% strand | — |
Ligands and binding sites
- IOD · Iodide ion · ion · 7 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 456 | 0.67 | 0.79 | 76 | empty |
| 2 | 79 | 0.40 | 0.78 | 18 | IOD |
Interfaces
1 interface between chains.
- A–B · 403 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 6ZGQ · AceL NrdHF class 3 split intein GSH linked splice inactive variant - C124A, N146A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6ZGQ · PDBe 6ZGQ
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