MolNFT v1 · #171493 · protein
SARS-cov-2 macrodomain in complex with ADP-hpm
6Z72: “SARS-cov-2 macrodomain in complex with ADP-hpm”. X-ray diffraction, 3 ligands (A3R, MLT, NA). MolNFT v1 #171493 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Z72
- Type
- protein
- Length
- 692 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTD1
- Ligands
- A3R, MLT, NA
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 174 | — | P0DTD1 |
| B, C | — | protein | 173 | — | P0DTD1 |
| D | — | protein | 172 | — | P0DTD1 |
Ligands and binding sites
- A3R · Adenosine Diphosphate (Hydroxymethyl)pyrrolidine monoalcohol · ligand · 4 copies · chains A, B, C, D
- MLT · D-malate · ligand · chains D
- NA · Sodium ion · metal · 4 copies · chains A, B, C, D
- EDO · 1,2-ethanediol · additive · 7 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Z72 · SARS-CoV-2 Macrodomain in complex with ADP-HPM · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 6Z72 · PDBe 6Z72 · UniProt P0DTD1
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