MolNFT v1 · #171478 · protein
HDAC-PC
6Z6F: “HDAC-PC”. Electron microscopy, 1 ligand (ZN). MolNFT v1 #171478 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Z6F
- Type
- protein
- Length
- 2,387 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P53973, Q06623, Q06629
- Ligands
- ZN
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 651 | — | P53973 |
| B | — | protein | 661 | — | P53973 |
| D | — | protein | 534 | — | Q06623 |
| C | — | protein | 541 | — | Q06629 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Z6F · HDAC-PC · the same entry in another collection · chain C against C, TM-score 1.00
- P53973 · AlphaFold monomer V2.0 prediction for histone deacetylase HDA1 (P53973) · a predicted model of the same protein · chain A against A, TM-score 0.83
- Q06629 · AlphaFold monomer V2.0 prediction for HDA1 complex subunit 2 (Q06629) · a predicted model of the same protein · chain C against A, TM-score 0.63
- Q06623 · AlphaFold monomer V2.0 prediction for HDA1 complex subunit 3 (Q06623) · a predicted model of the same protein · chain D against A, TM-score 0.54
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53973
- Every structure of UniProt Q06623
- Every structure of UniProt Q06629
- Elsewhere: RCSB PDB 6Z6F · PDBe 6Z6F · UniProt P53973 · UniProt Q06623 · UniProt Q06629
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