MolNFT v1 · #171459 · protein
Rc-LH1(14)-W complex from rhodopseudomonas palustris
6Z5S: “Rc-LH1(14)-W complex from rhodopseudomonas palustris”. Electron microscopy, 9 ligands (BCL, CRT, CDL). MolNFT v1 #171459 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Z5S
- Type
- protein
- Length
- 2,214 residues
- Chains
- 32
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6N1K3, A0A4Z7, O83005, A0A4Z9, Q6N9L4, Q6N9L5
- Ligands
- BCL, CRT, CDL, U10, 6PL, BPH, QAK, PGT, FE
Structure
electron microscopy · 11 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| W | — | protein | 94 | — | Q6N1K3 |
| M | — | protein | 299 | — | A0A4Z7 |
| L | — | protein | 276 | — | O83005 |
| H | — | protein | 251 | — | A0A4Z9 |
| 1, 5, 3, Y, V, T, C, R, P, N, G, E | — | protein | 46 | — | Q6N9L4 |
| 2, Z, X, U, B, K, I | — | protein | 47 | — | Q6N9L5 |
| 6 | — | protein | 42 | — | Q6N9L5 |
| 4 | — | protein | 46 | — | Q6N9L5 |
| A | — | protein | 40 | — | Q6N9L4 |
| D, S, Q, O, F | — | protein | 48 | — | Q6N9L5 |
| J | — | protein | 45 | — | Q6N9L4 |
Ligands and binding sites
- BCL · Bacteriochlorophyll A · ligand · 32 copies · chains M, L, 1, 2, Y, Z, 3, 4, 5, 6, V, X, T, U, R, S, W, A, B, C, D, E, F, P, Q, N, O, J, K, G, I
- CRT · Spirilloxanthin · ligand · 13 copies · chains 1, 2, 3, Y, Z, 5, 4, V, X, T, W, A, B, C, D, E, U, R, S, P, Q, N, O, J, K, G, I, F
- CDL · Cardiolipin · ligand · 6 copies · chains M, L, H, P, N, C, G, E, 5, 3, J, F
- U10 · Ubiquinone-10 · ligand · 3 copies · chains M, L, C, 1, Y
- 6PL · (4S,7R)-4-hydroxy-N,N,N-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide · ligand · 3 copies · chains M, H, N, L, C, E
- BPH · Bacteriopheophytin A · ligand · 2 copies · chains M, L
- QAK · (6~{R},10~{S},14~{R},19~{R},23~{S},24~{E},27~{S}, 28~{E})-2,6,10,14,19,23,27,31-octamethyldotriaconta-24,28-dien-2-ol · ligand · chains M, R
- PGT · (1S)-2-{[{[(2R)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate · ligand · chains M, P, N
- FE · Fe (III) ion · metal · chains M, L
- LMT · Dodecyl-beta-D-maltoside · additive · 29 copies · chains M, P, W, L, A, 2, Z, 6, 4, X, U, B, D, R, S, Q, O, H, N, J, K, I, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Z5S · RC-LH1(14)-W complex from Rhodopseudomonas palustris · the same entry in another collection · chain W against W, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6N1K3
- Every structure of UniProt A0A4Z7
- Every structure of UniProt O83005
- Every structure of UniProt A0A4Z9
- Every structure of UniProt Q6N9L4
- Every structure of UniProt Q6N9L5
- Elsewhere: RCSB PDB 6Z5S · PDBe 6Z5S · UniProt Q6N1K3 · UniProt A0A4Z7 · UniProt O83005 · UniProt A0A4Z9 · UniProt Q6N9L4 · UniProt Q6N9L5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.