MolNFT v1 · #171348 · protein

Structure of the EC2 domain of CD9 in complex with nanobody 4E8

6Z1V: “Structure of the EC2 domain of CD9 in complex with nanobody 4E8”. X-ray diffraction. MolNFT v1 #171348 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6Z1V
Type: protein
Length: 203 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P21926

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	80	—	P21926
B	—	protein	123	—	—

Ligands and binding sites

PGE · Triethylene glycol · additive · chains A
EDO · 1,2-ethanediol · additive · chains A, B
ACY · Acetic acid · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6Z1V · Structure of the EC2 domain of CD9 in complex with nanobody 4E8 · the same entry in another collection · chain A against A, TM-score 1.00
P21926 · AlphaFold monomer V2.0 prediction for CD9 antigen (P21926) · a predicted model of the same protein · chain A against A, TM-score 0.72

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P21926
Elsewhere: RCSB PDB 6Z1V · PDBe 6Z1V · UniProt P21926

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