MolNFT v1 · #171136 · protein
1.45 ångström resolution crystal structure of C-terminal dimerization domain of nucleocapsid phosphoprotein from SARS-cov-2
6YUN · Nucleoprotein: “1.45 ångström resolution crystal structure of C-terminal dimerization domain of nucleocapsid phosphoprotein…”. X-ray diffraction, 3 pockets (best druggability 0.32). MolNFT v1 #171136 on GenesisL1: 3D structure…
- PDB
- 6YUN
- Type
- protein
- Length
- 251 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleoprotein
- UniProt
- P0DTC9
- Pockets
- 3 · best druggability 0.32
Structure
x-ray diffraction · 2 distinct chains · 39% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoprotein | protein | 116 | 41% helix, 19% strand | P0DTC9 |
| B | Nucleoprotein | protein | 135 | 38% helix, 19% strand | P0DTC9 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 73 | 0.32 | 0.74 | 17 | empty |
| 2 | 55 | 0.30 | 0.76 | 14 | empty |
| 3 | 53 | 0.27 | 0.74 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 2680 Ų buried · 41 hydrogen bonds · protein-protein
Compared structures
- 6YUN · 1.45 Angstrom Resolution Crystal Structure of C-terminal Dimerization Domain of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC9
- Elsewhere: RCSB PDB 6YUN · PDBe 6YUN · UniProt P0DTC9
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