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MolNFT v1 · #171009 · protein

Crystal structure for the complex of human carbonic anhydrase II and 4-((1-(2-(hydroxymethyl)-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin- 1(2H)-YL)TETRAHYDROFURAN-3-yl)-1H-1,2,3-triazol-4-YL)METHOXY) benzenesulfonamide

6YPW · Carbonic anhydrase 2: “Crystal structure for the complex of human carbonic anhydrase II and…”. X-ray diffraction, 2 ligands (P75, ZN), 2 pockets (best druggability 0.58). MolNFT v1 #171009 on GenesisL1: 3D structure, binding sites…

PDB
6YPW
Type
protein
Length
258 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Carbonic anhydrase 2
EC
4.2.1.1
UniProt
P00918
Ligands
P75, ZN
Pockets
2 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain · 16% helix, 30% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ACarbonic anhydrase 2 (EC 4.2.1.1)protein25816% helix, 30% strandP00918

Ligands and binding sites

  • P75 · 4-[[1-[(2~{S},3~{S},5~{R})-2-(hydroxymethyl)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]oxolan-3-yl]-1,2,3-triazol-4-yl]methoxy]benzenesulfonamide · ligand · chains A
  • ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11600.580.8226P75
2640.280.7315empty

Compared structures

  • 6YPW · Crystal structure for the complex of human carbonic anhydrase II and… · the same entry in another collection · chain A against A, TM-score 1.00
  • P00918 · AlphaFold monomer V2.0 prediction for carbonic anhydrase 2 (P00918) · a predicted model of the same protein · chain A against A, TM-score 0.99

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