MolNFT v1 · #170959 · protein
Structure of lysozyme from sin imisx setup collected by rotation serial crystallography on crystals prelocated by 2D X-ray phase- contrast imaging
6YOD: “Structure of lysozyme from sin imisx setup collected by rotation serial crystallography on crystals…”. X-ray diffraction, 3 ligands (AE3, NA, BR). MolNFT v1 #170959 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YOD
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00698
- Ligands
- AE3, NA, BR
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 129 | — | P00698 |
Ligands and binding sites
- AE3 · 2-(2-ethoxyethoxy)ethanol · ligand · chains A
- NA · Sodium ion · metal · chains A
- BR · Bromide ion · ion · 7 copies · chains A
- ACY · Acetic acid · additive · chains A
- PG0 · 2-(2-methoxyethoxy)ethanol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YOD · Structure of Lysozyme from SiN IMISX setup collected by rotation serial crystallography… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00698
- Elsewhere: RCSB PDB 6YOD · PDBe 6YOD · UniProt P00698
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