MolNFT v1 · #170958 · protein

Structure of lysozyme from coc imisx setup collected by still serial crystallography on crystals prelocated by 2D X-ray phase-contrast imaging

6YOC: “Structure of lysozyme from coc imisx setup collected by still serial crystallography on crystals prelocated…”. X-ray diffraction, 2 ligands (NA, BR), 1 pocket (best druggability 0.32). MolNFT v1 #170958 on GenesisL1: 3D structure…

PDB: 6YOC
Type: protein
Length: 129 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lysozyme
EC: 3.2.1.17
UniProt: P00698
Ligands: NA, BR
Pockets: 1 · best druggability 0.32

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lysozyme (EC 3.2.1.17)	protein	129	40% helix, 11% strand	P00698

Ligands and binding sites

NA · Sodium ion · metal · chains A
BR · Bromide ion · ion · 7 copies · chains A
ACY · Acetic acid · additive · chains A
PE5 · 3,6,9,12,15,18,21,24-octaoxahexacosan-1-ol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	58	0.32	0.76	12	ACY

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

6YOC · Structure of Lysozyme from COC IMISX setup collected by still serial crystallography on… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00698
Elsewhere: RCSB PDB 6YOC · PDBe 6YOC · UniProt P00698

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