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MolNFT v1 · #170889 · protein

Crystal structure of bay-091 with PIP4K2A

6YM5: “Crystal structure of bay-091 with PIP4K2A”. X-ray diffraction, 2 ligands (OZ5, PO4). MolNFT v1 #170889 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6YM5
Type
protein
Length
618 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P48426
Ligands
OZ5, PO4

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein312—P48426
B—protein306—P48426

Ligands and binding sites

  • OZ5 · (2~{R})-2-[[3-cyano-2-[4-(2-fluoranyl-3-methyl-phenyl) phenyl]-1,7-naphthyridin-4-yl]amino]butanoic acid · ligand · 2 copies · chains A, B
  • PO4 · Phosphate ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6YM5 · Crystal structure of BAY-091 with PIP4K2A · the same entry in another collection · chain A against A, TM-score 1.00
  • P48426 · AlphaFold monomer V2.0 prediction for phosphatidylinositol 5-phosphate 4-kinase type-2… · a predicted model of the same protein · chain A against A, TM-score 0.99

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