MolNFT v1 · #170838 · protein
Crystal structure of YTHDC1 with compound DHU_DC1_092
6YKI: “Crystal structure of YTHDC1 with compound DHU_DC1_092”. X-ray diffraction, 2 ligands (OUZ, SO4). MolNFT v1 #170838 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YKI
- Type
- protein
- Length
- 328 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q96MU7
- Ligands
- OUZ, SO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 164 | — | Q96MU7 |
Ligands and binding sites
- OUZ · ~{N}-ethyl-2-[(2~{S},5~{R})-5-methyl-2-phenyl-morpholin-4-yl]ethanamine · ligand · 2 copies · chains B
- SO4 · Sulfate ion · ion · 9 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YKI · Crystal structure of YTHDC1 with compound DHU_DC1_092 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96MU7
- Elsewhere: RCSB PDB 6YKI · PDBe 6YKI · UniProt Q96MU7
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