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MolNFT v1 · #170757 · protein

Crystal structure of human glutaminyl cyclase in complex with GLU(GAMMA-hydrazide)-phe-ala

6YI1: “Crystal structure of human glutaminyl cyclase in complex with GLU(GAMMA-hydrazide)-phe-ala”. X-ray diffraction, 4 ligands (ORT, 66N, ZN). MolNFT v1 #170757 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6YI1
Type
protein
Length
661 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q16769
Ligands
ORT, 66N, ZN, SO4

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein331—Q16769
B—protein330—Q16769

Ligands and binding sites

  • ORT · (4~{S})-4-azanyl-5-oxidanylidene-pentanehydrazide · ligand · 3 copies · chains A, B
  • 66N · L-alaninamide · ligand · 3 copies · chains A, B
  • ZN · Zinc ion · metal · 10 copies · chains A, B
  • SO4 · Sulfate ion · ion · 11 copies · chains A, B
  • GOL · Glycerol · additive · 5 copies · chains A, B
  • PEG · Di(hydroxyethyl)ether · additive · 5 copies · chains A, B
  • PG4 · Tetraethylene glycol · additive · 3 copies · chains A
  • PGE · Triethylene glycol · additive · 2 copies · chains B
  • MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 2 copies · chains B
  • DIO · 1,4-diethylene dioxide · additive · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6YI1 · Crystal structure of human glutaminyl cyclase in complex with Glu(gamma-hydrazide)-Phe-Ala · the same entry in another collection · chain B against B, TM-score 1.00
  • Q16769 · AlphaFold monomer V2.0 prediction for glutaminyl-peptide cyclotransferase (Q16769) · a predicted model of the same protein · chain A against A, TM-score 0.98

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