MolNFT v1 · #170757 · protein
Crystal structure of human glutaminyl cyclase in complex with GLU(GAMMA-hydrazide)-phe-ala
6YI1: “Crystal structure of human glutaminyl cyclase in complex with GLU(GAMMA-hydrazide)-phe-ala”. X-ray diffraction, 4 ligands (ORT, 66N, ZN). MolNFT v1 #170757 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YI1
- Type
- protein
- Length
- 661 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q16769
- Ligands
- ORT, 66N, ZN, SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 331 | — | Q16769 |
| B | — | protein | 330 | — | Q16769 |
Ligands and binding sites
- ORT · (4~{S})-4-azanyl-5-oxidanylidene-pentanehydrazide · ligand · 3 copies · chains A, B
- 66N · L-alaninamide · ligand · 3 copies · chains A, B
- ZN · Zinc ion · metal · 10 copies · chains A, B
- SO4 · Sulfate ion · ion · 11 copies · chains A, B
- GOL · Glycerol · additive · 5 copies · chains A, B
- PEG · Di(hydroxyethyl)ether · additive · 5 copies · chains A, B
- PG4 · Tetraethylene glycol · additive · 3 copies · chains A
- PGE · Triethylene glycol · additive · 2 copies · chains B
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 2 copies · chains B
- DIO · 1,4-diethylene dioxide · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YI1 · Crystal structure of human glutaminyl cyclase in complex with Glu(gamma-hydrazide)-Phe-Ala · the same entry in another collection · chain B against B, TM-score 1.00
- Q16769 · AlphaFold monomer V2.0 prediction for glutaminyl-peptide cyclotransferase (Q16769) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q16769
- Elsewhere: RCSB PDB 6YI1 · PDBe 6YI1 · UniProt Q16769
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