MolNFT v1 · #170702 · protein
Nadase from aspergillus fumigatus with trapped reaction products
6YGF: “Nadase from aspergillus fumigatus with trapped reaction products”. X-ray diffraction, 7 ligands (NCA, AR6, NAG). MolNFT v1 #170702 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YGF
- Type
- protein
- Length
- 418 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q4WL81
- Ligands
- NCA, AR6, NAG, FUC, MAN, BMA, PO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 209 | — | Q4WL81 |
| A | — | protein | 209 | — | Q4WL81 |
Ligands and binding sites
- NCA · Nicotinamide · ligand · chains A
- AR6 · [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [hydroxy-[[(2R,3S,4R,5S)-3,4,5-trihydroxyoxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate · ligand · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 8 copies · chains B, A
- FUC · alpha-L-fucopyranose · sugar · 4 copies · chains B, A
- MAN · alpha-D-mannopyranose · sugar · 2 copies
- BMA · beta-D-mannopyranose · sugar
- PO4 · Phosphate ion · ion · 3 copies · chains B, A
- GOL · Glycerol · additive · 3 copies · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YGF · NADase from Aspergillus fumigatus with trapped reaction products · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4WL81
- Elsewhere: RCSB PDB 6YGF · PDBe 6YGF · UniProt Q4WL81
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