MolNFT v1 · #170644 · protein

Il-2 in complex with a Fab fragment from ufka-20

6YE3: “Il-2 in complex with a Fab fragment from ufka-20”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #170644 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6YE3
Type: protein
Length: 1,722 residues
Chains: 9
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P60568
Ligands: NAG

Structure

x-ray diffraction · 6 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	223	—	—
B, E, H	—	protein	219	—	—
C	—	protein	131	—	P60568
D, G	—	protein	225	—	—
F	—	protein	130	—	P60568
I	—	protein	131	—	P60568

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains B, E, H

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6YE3 · IL-2 in complex with a Fab fragment from UFKA-20 · the same entry in another collection · chain I against I, TM-score 1.00
P60568 · AlphaFold monomer V2.0 prediction for interleukin-2 (P60568) · a predicted model of the same protein · chain F against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P60568
Elsewhere: RCSB PDB 6YE3 · PDBe 6YE3 · UniProt P60568

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