MolNFT v1 · #170624 · protein
Human wtsting in complex with 2',2'-difluoro-3',3'-C-di-gmp
6YDB · Stimulator of interferon protein: “Human wtsting in complex with 2',2'-difluoro-3',3'-C-di-gmp”. X-ray diffraction, 1 ligand (GGF), 1 pocket (best druggability 0.41). MolNFT v1 #170624 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6YDB
- Type
- protein
- Length
- 171 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Stimulator of interferon protein
- UniProt
- A0A2R3XZB7
- Ligands
- GGF
- Pockets
- 1 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Stimulator of interferon protein | protein | 171 | 46% helix, 26% strand | A0A2R3XZB7 |
Ligands and binding sites
- GGF · 2-azanyl-9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R}, 17~{R},18~{R})-17-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3, 12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$L^{5}, 12$L^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]-1~{H}-purin-6-one · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 140 | 0.41 | 0.75 | 24 | empty |
Compared structures
- 6YDB · Human wtSTING in complex with 2',2'-difluoro-3',3'-c-di-GMP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2R3XZB7
- Elsewhere: RCSB PDB 6YDB · PDBe 6YDB · UniProt A0A2R3XZB7
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